species:   Rhsol
pid:       PID0459
parent:    Rhi-milR-77
paralog:   
locus:     KB317696.1:795409-795502
matures:   ['GCGGGAUUGCAGUACAAAGGGAGA', 'CCCGUUGUGCUCAUUCUGCUG']
srr:       SRR1994876
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994876.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994876.cram KB317696.1:795409-795502

1 out of bounds
5 alignments
5 proper strand
5 stranded perfect matches

                             *************************   ****************************         
CAGCCGAGUUUGGCUUGACAGUUGCAGCUAUCCCCGUUGUGCUCAUUCUGCUGAUUGGAUGCGGGAUUGCAGUACAAAGGGAGAUCAAAUGGCU
.(((((....)))))..........((((((((((.(((((((((((((((.........)))))).)).))))))).))).))).....))))
------------------------------------------------------------GCGGGAUUGCAGUACAAAGGGAGA---------- l=24 a=0 c
--------------------------------CCCGUUGUGCUCAUUCUGCUG----------------------------------------- l=21 a=0 c*
-----------------------------------------------------------UGCGGGAUUGCAGUACAAAGGGAGAU--------- l=26 a=1 ma
-------------------------------CCCCGUUGUGCUCAUUCUGCUGA---------------------------------------- l=23 a=0 ma*

-----------------------------------------------------------UGCGGGAUUGCAGUACAAAGGG------------- l=22 a=1 
-----------------------------------------------------------UGCGGGAUUGCAGUACAAAGGGAGAU--------- l=26 a=1 (ma)
------------------------------------------------------------GCGGGAUUGCAGUACAAAGGG------------- l=21 a=1 
------------------------------------------------------------GCGGGAUUGCAGUACAAAGGGAGAUC-------- l=26 a=1 
-------------------------------------------------------------CGGGAUUGCAGUACAAAGGGAGAU--------- l=24 a=1 

mb-01011
ax-1001001
ku-01
ss-100011101100
fn-011
